OCA Atlas for 4NIA

4NIA

Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints

date

authors

Larson, S.B., Day, J.S., McPherson, A.

compound

source

symmetry

R_factor

R_Free

0.156

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

1.82

ligand

MG, PO4, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L

Primary reference

Satellite tobacco mosaic virus refined to 1.4 A resolution., Larson SB, Day JS, McPherson A, Acta Crystallogr D Biol Crystallogr. 2014 Sep 1;70(Pt 9):2316-30. doi:, 10.1107/S1399004714013789. Epub 2014 Aug 29. PMID:25195746

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]

Biological Unit Coordinates (4nia.pdb1.gz) 2245 Kb

LPC: Ligand-Protein Contacts for 4NIA

CSU: Contacts of Structural Units for 4NIA

Structure Factors (4212 Kb)

Retrieve 4NIA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4NIA from S2C, [Save to disk]

Re-refined 4nia structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NIA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4NIA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4NIA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4nia_S] [4nia_y] [4nia_B] [4nia_a] [4nia_7] [4nia_N] [4nia_4] [4nia_2] [4nia_d] [4nia_q] [4nia_W] [4nia_T] [4nia_Z] [4nia_C] [4nia_l] [4nia_c] [4nia_Y] [4nia_5] [4nia_z] [4nia_o] [4nia_k] [4nia_u] [4nia_R] [4nia_M] [4nia_r] [4nia_Q] [4nia_3] [4nia_j] [4nia_8] [4nia_s] [4nia_V] [4nia_6] [4nia_A] [4nia_b] [4nia_h] [4nia_I] [4nia_w] [4nia_i] [4nia_m] [4nia_H] [4nia_e] [4nia_G] [4nia_U] [4nia_p] [4nia_n] [4nia_F] [4nia_g] [4nia_t] [4nia_O] [4nia_L] [4nia_J] [4nia] [4nia_D] [4nia_X] [4nia_v] [4nia_E] [4nia_f] [4nia_P] [4nia_1] [4nia_x] [4nia_K]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 4NIA

Community annotation for 4NIA at PDBWiki (http://pdbwiki.org)

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