4NIE Transcription Agonist date Nov 06, 2013
title Crystal Structure Of The Orphan Nuclear Receptor Ror(Gamma)T Binding Domain In Complex With Small Molecule Ligand
authors Y.L.Ma, L.Q.Yang
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, B
Fragment: Ligand Binding Domain, Unp Residues 263-509
Synonym: Nuclear Receptor Rzr-Gamma, Nuclear Receptor Subfa Group F Member 3, Retinoid-Related Orphan Receptor-Gamma;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1f3, Rorc, Rorg, Rzrg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Peptide From Nuclear Receptor Coactivator 2
Chain: C, D
Fragment: Unp Residues 684-697
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.085 86.349 91.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand DMX, NBH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (4nie.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4nie.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4NIE
  • CSU: Contacts of Structural Units for 4NIE
  • Structure Factors (686 Kb)
  • Retrieve 4NIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NIE from S2C, [Save to disk]
  • Re-refined 4nie structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NIE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NIE, from MSDmotif at EBI
  • Fold representative 4nie from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nie] [4nie_C] [4nie_A] [4nie_D] [4nie_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NIE: [HOLI ] by SMART
  • Other resources with information on 4NIE
  • Community annotation for 4NIE at PDBWiki (http://pdbwiki.org)

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