4NJ4	Crystal Structure of Human ALKBH5	date	2013-11-08
authors	Aik, W.S., McDonough, M.A., Schofield, C.J.
compound		source
symmetry		R_factor R_Free 0.2181
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.02
ligand	GOL, MN, NO3, UN9	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of human RNA N6-methyladenine demethylase ALKBH5 provides insights into its mechanisms of nucleic acid recognition and demethylation., Aik W, Scotti JS, Choi H, Gong L, Demetriades M, Schofield CJ, McDonough MA, Nucleic Acids Res. 2014 Apr 1;42(7):4741-54. doi: 10.1093/nar/gku085. Epub 2014, Jan 30. PMID:24489119

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (4nj4.pdb1.gz) 76 Kb Biological Unit Coordinates (4nj4.pdb2.gz) 70 Kb LPC: Ligand-Protein Contacts for 4NJ4 CSU: Contacts of Structural Units for 4NJ4 Structure Factors (398 Kb) Retrieve 4NJ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4NJ4 from S2C, [Save to disk] Re-refined 4nj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NJ4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4NJ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4NJ4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4nj4_B] [4nj4] [4nj4_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4NJ4

Community annotation for 4NJ4 at PDBWiki (http://pdbwiki.org)

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