4NKS Crystal structure of human fibroblast growth factor receptor 1 kinase domain in complex with pyrazolaminopyrimidine 3 date 2013-11-13
authors Norman, R.A., Klein, T.
compound source
symmetry
R_factor
R_Free 0.27762
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 2M2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFGFR1 Kinase Inhibitors: Close Regioisomers Adopt Divergent Binding Modes and Display Distinct Biophysical Signatures., Klein T, Tucker J, Holdgate GA, Norman RA, Breeze AL, ACS Med Chem Lett. 2013 Dec 6;5(2):166-71. doi: 10.1021/ml4004205. eCollection, 2014 Feb 13. PMID:24900792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (4nks.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4nks.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4NKS
  • CSU: Contacts of Structural Units for 4NKS
  • Structure Factors (495 Kb)
  • Retrieve 4NKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NKS from S2C, [Save to disk]
  • Re-refined 4nks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NKS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nks_A] [4nks_B] [4nks]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NKS: [TyrKc ] by SMART
    • Other resources with information on 4NKS
  • Community annotation for 4NKS at PDBWiki (http://pdbwiki.org)

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