4NLG Transferase Dna date Nov 14, 2013
title Y-Family Dna Polymerase Chimera Dbh-Dpo4(243-245)-Dbh
authors P.Mukherjee, R.C.Wilson, J.D.Pata
compound source
Molecule: Dna Polymerase Iv
Chain: A
Synonym: Pol Iv
Engineered: Yes
Mutation: Yes
Organism_scientific: Sulfolobus Acidocaldarius
Organism_taxid: 2285
Gene: Dbh, Saci_0554
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Blr(De3) Plyss
Expression_system_vector_type: Plasmid

Molecule: 5'-D(Gpgpcpapcptpgpaptpcpgpgpg)-3'
Chain: P
Engineered: Yes
Other_details: Primer Dna

Synthetic: Yes

Molecule: 5'-D(Tptpapcpgpcpcpcptpgpaptpcpapg C)-3';
Chain: T
Engineered: Yes
Other_details: Template Dna

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
120.193 103.067 53.049 90.00 105.39 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, DCP enzyme Transferase E.C. BRENDA
  • DNA-directed DNA polymerase ...

  • Primary referenceThree Residues of the Interdomain Linker Determine the Conformation and Single-Base Deletion Fidelity of Y-family Translesion Polymerases., Mukherjee P, Wilson RC, Lahiri I, Pata JD, J Biol Chem. 2014 Jan 10. PMID:24415763
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4nlg.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4NLG
  • CSU: Contacts of Structural Units for 4NLG
  • Structure Factors (208 Kb)
  • Retrieve 4NLG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NLG from S2C, [Save to disk]
  • Re-refined 4nlg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NLG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NLG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NLG, from MSDmotif at EBI
  • Fold representative 4nlg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nlg_P] [4nlg_T] [4nlg] [4nlg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NLG
  • Community annotation for 4NLG at PDBWiki (http://pdbwiki.org)

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