4NLK Transferase, Lyase Dna date Nov 14, 2013
title Structure Of Human Dna Polymerase Beta Complexed With 8brg I Template Base-Paired With Incoming Non-Hydrolyzable Ctp
authors M.C.Koag, K.Min, A.F.Monzingo, S.Lee
compound source
Molecule: 5'-D(Cpcpgpapcp(Bgm)Ptpcpgpcpaptpcp 3';
Chain: T
Engineered: Yes
Other_details: Template
Synthetic: Yes

Molecule: 5'-D(Gpcptpgpaptpgpcpgpa)-3'
Chain: P
Engineered: Yes
Other_details: Up Primer

Synthetic: Yes

Molecule: 5'-D(Pgptpcpgpg)-3'
Chain: D
Engineered: Yes
Other_details: Down Primer

Synthetic: Yes

Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7, 4.2.99.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.807 79.706 55.683 90.00 107.83 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand 0KX, BGM, MG, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for promutagenicity of 8-halogenated guanine., Koag MC, Min K, Lee S, J Biol Chem. 2014 Jan 14. PMID:24425881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4nlk.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4NLK
  • CSU: Contacts of Structural Units for 4NLK
  • Structure Factors (106 Kb)
  • Retrieve 4NLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NLK from S2C, [Save to disk]
  • Re-refined 4nlk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NLK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NLK, from MSDmotif at EBI
  • Fold representative 4nlk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nlk_D] [4nlk_A] [4nlk_P] [4nlk] [4nlk_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NLK: [HhH1] [POLXc ] by SMART
  • Other resources with information on 4NLK
  • Community annotation for 4NLK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science