4NN2 Transcription date Nov 16, 2013
title Protein Crystal Structure Of Human Borjeson-Forssman-Lehmann Associated Protein Phf6
authors Z.Liu, F.Li, J.Zhang, Y.Mei, J.Wu, Y.Shi
compound source
Molecule: Phd Finger Protein 6
Chain: A, B
Fragment: Unp Residues 208-333
Synonym: Phd-Like Zinc Finger Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf6, Kiaa1823
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: P 3 2 1
R_factor 0.159 R_Free 0.176
length a length b length c angle alpha angle beta angle gamma
102.780 102.780 51.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.47 Å
ligand GOL, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (4nn2.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4nn2.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4NN2
  • CSU: Contacts of Structural Units for 4NN2
  • Structure Factors (758 Kb)
  • Retrieve 4NN2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NN2 from S2C, [Save to disk]
  • Re-refined 4nn2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NN2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NN2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NN2, from MSDmotif at EBI
  • Fold representative 4nn2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nn2_B] [4nn2] [4nn2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NN2: [PHD ] by SMART
  • Other resources with information on 4NN2
  • Community annotation for 4NN2 at PDBWiki (http://pdbwiki.org)

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