4NO5 Crystal structure of non-phosphorylated form of AMPD2 phosphopeptide bound to HLA-A2 date
authors Mohammed, F., Stones, D.H., Willcox, B.E.
compound source
symmetry
R_factor
R_Free 0.2367
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EDO, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
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    • Primary referenceThe antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status., Mohammed F, Stones DH, Zarling AL, Willcox CR, Shabanowitz J, Cummings KL, Hunt DF, Cobbold M, Engelhard VH, Willcox BE, Oncotarget. 2017 Apr 8;8(33):54160-54172. doi: 10.18632/oncotarget.16952., eCollection 2017 Aug 15. PMID:28903331
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4no5.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4NO5
  • CSU: Contacts of Structural Units for 4NO5
  • Structure Factors (385 Kb)
  • Retrieve 4NO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NO5 from S2C, [Save to disk]
  • Re-refined 4no5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NO5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NO5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4no5_B] [4no5_A] [4no5] [4no5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NO5: [IGc1 ] by SMART
    • Other resources with information on 4NO5
  • Community annotation for 4NO5 at PDBWiki (http://pdbwiki.org)

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