4NPL	Crystal structure of Zebrafish ALKBH5 in complex with alpha-ketoglutarate	date	2013-11-21
authors	He, C., Chen, W., Zhang, L.
compound		source
symmetry		R_factor R_Free 0.2379
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.65
ligand	AKG, MN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the RNA demethylase ALKBH5 from zebrafish., Chen W, Zhang L, Zheng G, Fu Y, Ji Q, Liu F, Chen H, He C, FEBS Lett. 2014 Mar 18;588(6):892-8. doi: 10.1016/j.febslet.2014.02.021. Epub, 2014 Feb 20. PMID:24561204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk] Biological Unit Coordinates (4npl.pdb1.gz) 80 Kb Biological Unit Coordinates (4npl.pdb2.gz) 75 Kb LPC: Ligand-Protein Contacts for 4NPL CSU: Contacts of Structural Units for 4NPL Structure Factors (949 Kb) Retrieve 4NPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4NPL from S2C, [Save to disk] Re-refined 4npl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NPL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4NPL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4NPL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4npl_B] [4npl] [4npl_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4NPL

Community annotation for 4NPL at PDBWiki (http://pdbwiki.org)

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