4NQL	The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in complex with lysine 63-linked diubiquitin	date
authors	Ronau, J.A., Shrestha, R.K., Das, C.
compound		source
symmetry		R_factor R_Free 0.26333
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	EDO, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product., Shrestha RK, Ronau JA, Davies CW, Guenette RG, Strieter ER, Paul LN, Das C, Biochemistry. 2014 May 20;53(19):3199-217. doi: 10.1021/bi5003162. Epub 2014 May , 9. PMID:24787148

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (4nql.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 4NQL CSU: Contacts of Structural Units for 4NQL Structure Factors (330 Kb) Retrieve 4NQL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4NQL from S2C, [Save to disk] Re-refined 4nql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NQL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4NQL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4NQL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4nql_C] [4nql_A] [4nql_B] [4nql] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4NQL: [JAB_MPN] [UBQ ] by SMART

Other resources with information on 4NQL

Community annotation for 4NQL at PDBWiki (http://pdbwiki.org)

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