4NQV Crystal Structure of HLA A*0101 in complex with NP44, an 9-mer influenza epitope date 2013-11-25
authors Rossjohn, J., Gras, S.
compound source
symmetry
R_factor
R_Free 0.2914
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, D, L, B
  • cellular response to iron io...

    • Primary referencePreexisting CD8+ T-cell immunity to the H7N9 influenza A virus varies across ethnicities., Quinones-Parra S, Grant E, Loh L, Nguyen TH, Campbell KA, Tong SY, Miller A, Doherty PC, Vijaykrishna D, Rossjohn J, Gras S, Kedzierska K, Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):1049-54. doi:, 10.1073/pnas.1322229111. Epub 2014 Jan 6. PMID:24395804
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (798 Kb) [Save to disk]
  • Biological Unit Coordinates (4nqv.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (4nqv.pdb2.gz) 136 Kb
  • Biological Unit Coordinates (4nqv.pdb3.gz) 136 Kb
  • Biological Unit Coordinates (4nqv.pdb4.gz) 136 Kb
  • Biological Unit Coordinates (4nqv.pdb5.gz) 136 Kb
  • Biological Unit Coordinates (4nqv.pdb6.gz) 138 Kb
  • CSU: Contacts of Structural Units for 4NQV
  • Structure Factors (4691 Kb)
  • Retrieve 4NQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NQV from S2C, [Save to disk]
  • Re-refined 4nqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NQV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nqv_Q] [4nqv_M] [4nqv_K] [4nqv_E] [4nqv_I] [4nqv_C] [4nqv_P] [4nqv_F] [4nqv] [4nqv_R] [4nqv_D] [4nqv_B] [4nqv_O] [4nqv_L] [4nqv_A] [4nqv_G] [4nqv_J] [4nqv_N] [4nqv_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NQV: [IGc1 ] by SMART
    • Other resources with information on 4NQV
  • Community annotation for 4NQV at PDBWiki (http://pdbwiki.org)

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