4NRC Crystal Structure of the bromodomain of human BAZ2B in complex with compound-3 N01186 date 2013-11-26
authors Muniz, J.R.C., Felletar, I., Chaikuad, A., Filippakopoulos, P., Ferguson, F.M., Fedorov, O., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Ciulli, A., Knapp, S., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.1906
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.86
ligand 15P, 2LY, EDO enzyme
Primary referenceTargeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain., Ferguson FM, Fedorov O, Chaikuad A, Philpott M, Muniz JR, Felletar I, von Delft F, Heightman T, Knapp S, Abell C, Ciulli A, J Med Chem. 2013 Dec 27;56(24):10183-7. doi: 10.1021/jm401582c. Epub 2013 Dec 13. PMID:24304323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4nrc.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4NRC
  • CSU: Contacts of Structural Units for 4NRC
  • Structure Factors (410 Kb)
  • Retrieve 4NRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NRC from S2C, [Save to disk]
  • Re-refined 4nrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NRC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NRC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nrc_A] [4nrc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NRC: [BROMO ] by SMART
    • Other resources with information on 4NRC
  • Community annotation for 4NRC at PDBWiki (http://pdbwiki.org)

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