4NRG Crystal Structure of a human Mms2/Ubc13 D118G mutant date
authors Hodge, C.D., Edwards, R.A., Glover, J.N.M.
compound source
symmetry
R_factor
R_Free 0.2108
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStochastic Gate Dynamics Regulate the Catalytic Activity of Ubiquitination Enzymes., Rout MK, Hodge CD, Markin CJ, Xu X, Glover JN, Xiao W, Spyracopoulos L, J Am Chem Soc. 2014 Dec 5. PMID:25423605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4nrg.pdb1.gz) 99 Kb
  • CSU: Contacts of Structural Units for 4NRG
  • Structure Factors (455 Kb)
  • Retrieve 4NRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NRG from S2C, [Save to disk]
  • Re-refined 4nrg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NRG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NRG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nrg_B] [4nrg] [4nrg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NRG: [UBCc ] by SMART
  • Other resources with information on 4NRG
  • Community annotation for 4NRG at PDBWiki (http://pdbwiki.org)

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