4NST Transferase Transcription date Nov 29, 2013
title Crystal Structure Of Human Cdk12cyclin K In Complex With Ad Fluoride
authors C.A.Boesken, L.Farnung, K.Anand, M.Geyer
compound source
Molecule: Cyclin-Dependent Kinase 12
Chain: A, C
Fragment: Protein Kinase Domain, Residues 714-1063
Synonym: Cdc2-Related Kinase, Arginineserine-Rich, Crkrs, Division Cycle 2-Related Protein Kinase 7, Cdc2-Related Pro Kinase 7, Cell Division Protein Kinase 12, Hcdk12;
Ec: 2.7.11.22, 2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk12, Crk7, Crkrs, Kiaa0904
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacebac1

Molecule: Cyclin-K
Chain: B, D
Fragment: Unp Residues 1-267
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnk, Cpr4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pidk
symmetry Space Group: P 1
R_factor 0.195 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.720 78.850 91.490 104.04 85.76 101.46
method X-Ray Diffractionresolution 2.20 Å
ligand ADP, AF3, EDO, MG, TPO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceThe structure and substrate specificity of human Cdk12/Cyclin K., Bosken CA, Farnung L, Hintermair C, Merzel Schachter M, Vogel-Bachmayr K, Blazek D, Anand K, Fisher RP, Eick D, Geyer M, Nat Commun. 2014 Mar 24;5:3505. doi: 10.1038/ncomms4505. PMID:24662513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (400 Kb) [Save to disk]
  • Biological Unit Coordinates (4nst.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (4nst.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (4nst.pdb3.gz) 113 Kb
  • Biological Unit Coordinates (4nst.pdb4.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4NST
  • CSU: Contacts of Structural Units for 4NST
  • Structure Factors (596 Kb)
  • Retrieve 4NST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NST from S2C, [Save to disk]
  • Re-refined 4nst structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NST
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NST, from MSDmotif at EBI
  • Fold representative 4nst from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nst_C] [4nst] [4nst_B] [4nst_D] [4nst_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NST: [CYCLIN] [S_TKc ] by SMART
  • Other resources with information on 4NST
  • Community annotation for 4NST at PDBWiki (http://pdbwiki.org)

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