4NUB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FE, GOL, MSE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and Functional Analysis of YcfD, a Novel 2-Oxoglutarate/Fe-Dependent Oxygenase Involved in Translational Regulation in Escherichiacoli., van Staalduinen L, Novakowski SK, Jia Z, J Mol Biol. 2014 Feb 13. pii: S0022-2836(14)00074-6. doi:, 10.1016/j.jmb.2014.02.008. PMID:24530688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (4nub.pdb1.gz) 236 Kb LPC: Ligand-Protein Contacts for 4NUB CSU: Contacts of Structural Units for 4NUB Structure Factors (432 Kb) Retrieve 4NUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4NUB from S2C, [Save to disk] Re-refined 4nub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4NUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4nub] [4nub_A] SWISS-PROT database: Domain found in 4NUB: [JmjC ] by SMART

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