4NUV Heterotetramer structure of Region II from Plasmodium vivax Duffy Binding Protein (PvDBP) bound to the ectodomain of the Duffy Antigen Receptor for Chemokines (DARC) date
authors Tolia, N.H.
compound source
symmetry
R_factor
R_Free 0.2328
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRed Blood Cell Invasion by Plasmodium vivax: Structural Basis for DBP Engagement of DARC., Batchelor JD, Malpede BM, Omattage NS, Dekoster GT, Henzler-Wildman KA, Tolia NH, PLoS Pathog. 2014 Jan;10(1):e1003869. doi: 10.1371/journal.ppat.1003869. Epub, 2014 Jan 9. PMID:24415938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (4nuv.pdb1.gz) 311 Kb
  • Biological Unit Coordinates (4nuv.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (4nuv.pdb3.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 4NUV
  • CSU: Contacts of Structural Units for 4NUV
  • Structure Factors (366 Kb)
  • Retrieve 4NUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NUV from S2C, [Save to disk]
  • Re-refined 4nuv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NUV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NUV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nuv_D] [4nuv_C] [4nuv_A] [4nuv] [4nuv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NUV
  • Community annotation for 4NUV at PDBWiki (http://pdbwiki.org)

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