4NW3 Dna Binding Protein Dna date Dec 05, 2013
title Crystal Structure Of Mll Cxxc Domain In Complex With A Cpg D
authors C.Bian, W.Tempel, X.Chao, J.R.Walker, C.Bountra, J.Weigelt, C.H.Ar A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase 2a
Chain: A
Fragment: Cxxc Zinc Finger Domain (Unp Residues 1147-1204)
Synonym: Lysine N-Methyltransferase 2a, All-1, Cxxc-Type Zi Protein 7, Myeloidlymphoid Or Mixed-Lineage Leukemia, Myeloidlymphoid Or Mixed-Lineage Leukemia Protein 1, Trith Protein, Zinc Finger Protein Hrx;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl

Molecule: 5'-D(Gpcpcpaptpcpgpaptpgpgpc)-3'
Chain: B, C
Engineered: Yes
Other_details: Cpg Island

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.327 40.225 60.959 90.00 93.51 90.00
method X-Ray Diffractionresolution 2.82 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants., Xu C, Liu K, Lei M, Yang A, Li Y, Hughes TR, Min J, Structure. 2017 Dec 16. pii: S0969-2126(17)30396-9. doi:, 10.1016/j.str.2017.11.022. PMID:29276034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4nw3.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4NW3
  • CSU: Contacts of Structural Units for 4NW3
  • Structure Factors (274 Kb)
  • Retrieve 4NW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NW3 from S2C, [Save to disk]
  • Re-refined 4nw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NW3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NW3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nw3_A] [4nw3_B] [4nw3_C] [4nw3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NW3
  • Community annotation for 4NW3 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science