4O0D Crystal structure of the human L-asparaginase protein T168S mutant date 2013-12-13
authors Nomme, J., Lavie, A.
compound source
symmetry
R_factor
R_Free 0.23401
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand GLY, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceElucidation of the Specific Function of the Conserved Threonine Triad Responsible for Human l-Asparaginase Autocleavage and Substrate Hydrolysis., Nomme J, Su Y, Lavie A, J Mol Biol. 2014 Jun 26;426(13):2471-85. doi: 10.1016/j.jmb.2014.04.016. Epub, 2014 Apr 22. PMID:24768817
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4o0d.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4O0D
  • CSU: Contacts of Structural Units for 4O0D
  • Structure Factors (807 Kb)
  • Retrieve 4O0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O0D from S2C, [Save to disk]
  • Re-refined 4o0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O0D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O0D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o0d_A] [4o0d] [4o0d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4O0D
  • Community annotation for 4O0D at PDBWiki (http://pdbwiki.org)

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