4O0Z Structural and Biochemical Analyses of the Catalysis and Potency Impact of Inhibitor Phosphoribosylation by Human Nicotinamide Phosphoribosyltransferase date
authors Oh, A., Wang, W.
compound source
symmetry
R_factor
R_Free 0.2608
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand 2RM, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and biochemical analyses of the catalysis and potency impact of inhibitor phosphoribosylation by human nicotinamide phosphoribosyltransferase., Oh A, Ho YC, Zak M, Liu Y, Chen X, Yuen PW, Zheng X, Liu Y, Dragovich PS, Wang W, Chembiochem. 2014 May 26;15(8):1121-30. doi: 10.1002/cbic.201402023. Epub 2014, May 5. PMID:24797455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (4o0z.pdb1.gz) 318 Kb
  • LPC: Ligand-Protein Contacts for 4O0Z
  • CSU: Contacts of Structural Units for 4O0Z
  • Structure Factors (1132 Kb)
  • Retrieve 4O0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O0Z from S2C, [Save to disk]
  • Re-refined 4o0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O0Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O0Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o0z_B] [4o0z_A] [4o0z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4O0Z
  • Community annotation for 4O0Z at PDBWiki (http://pdbwiki.org)

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