4O1V SPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer date 2013-12-16
authors Calabrese, M.F., Watson, E.R., Schulman, B.A.
compound source
symmetry
R_factor
R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Primary referenceSPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer., Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, Calabrese MF, Watson ER, Prasad SM, Rinker-Schaeffer C, Eggener SE, Stricker T, Tian Y, Schulman BA, Liu J, White KP, Cancer Cell. 2014 Apr 14;25(4):455-68. doi: 10.1016/j.ccr.2014.02.007. Epub 2014 , Mar 20. PMID:24656772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4o1v.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 4O1V
  • Structure Factors (68 Kb)
  • Retrieve 4O1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O1V from S2C, [Save to disk]
  • Re-refined 4o1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O1V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O1V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o1v_B] [4o1v_A] [4o1v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O1V: [MATH ] by SMART
  • Other resources with information on 4O1V
  • Community annotation for 4O1V at PDBWiki (http://pdbwiki.org)

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