4O1V Protein Binding date Dec 16, 2013
title Spop Promotes Tumorigenesis By Acting As A Key Regulatory Hu Kidney Cancer
authors M.F.Calabrese, E.R.Watson, B.A.Schulman
compound source
Molecule: Speckle-Type Poz Protein
Chain: A
Fragment: Math Domain (Unp Residues 28-166)
Synonym: Hib Homolog 1, Roadkill Homolog 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spop
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Phosphatidylinositol 3,4,5-Trisphosphate 3-Phosph Dual-Specificity Protein Phosphatase Pten;
Chain: B
Fragment: Unp Residues 354-368
Synonym: Mutated In Multiple Advanced Cancers 1, Phosphatas Tensin Homolog;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.500 56.158 42.611 90.00 97.70 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceSPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer., Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, Calabrese MF, Watson ER, Prasad SM, Rinker-Schaeffer C, Eggener SE, Stricker T, Tian Y, Schulman BA, Liu J, White KP, Cancer Cell. 2014 Apr 14;25(4):455-68. doi: 10.1016/j.ccr.2014.02.007. Epub 2014 , Mar 20. PMID:24656772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4o1v.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 4O1V
  • Structure Factors (68 Kb)
  • Retrieve 4O1V in mmCIF format [Save to disk]
  • Re-refined 4o1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O1V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4O1V, from MSDmotif at EBI
  • Fold representative 4o1v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o1v_B] [4o1v_A] [4o1v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O1V: [MATH ] by SMART
  • Other resources with information on 4O1V
  • Community annotation for 4O1V at PDBWiki (http://pdbwiki.org)

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