4O3S Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-dc pair date 2013-12-18
authors Patra, A., Egli, M.
compound source
symmetry
R_factor
R_Free 0.2104
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand 0KX, 8OG, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta, Patra A, Nagy LD, Zhang Q, Su Y, Muller L, Guengerich FP, Egli M, J Biol Chem. 2014 Jun 13;289(24):16867-16882. Epub 2014 Apr 23. PMID:24759104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4o3s.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4O3S
  • CSU: Contacts of Structural Units for 4O3S
  • Structure Factors (2364 Kb)
  • Retrieve 4O3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O3S from S2C, [Save to disk]
  • Re-refined 4o3s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O3S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O3S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o3s_P] [4o3s] [4o3s_A] [4o3s_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4O3S
  • Community annotation for 4O3S at PDBWiki (http://pdbwiki.org)

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