4O4I Tubulin-Laulimalide-Epothilone A complex date
authors Prota, A.E., Bargsten, K., Northcote, P.T., Marsh, M., Altmann, K.H., Miller, J.H., Diaz, J.F., Steinmetz, M.O.
compound source
symmetry
R_factor
R_Free 0.2144
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ACP, CA, EP, GDP, GTP, LLM, MES, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


E


F


Primary referenceStructural basis of microtubule stabilization by laulimalide and peloruside a., Prota AE, Bargsten K, Northcote PT, Marsh M, Altmann KH, Miller JH, Diaz JF, Steinmetz MO, Angew Chem Int Ed Engl. 2014 Feb 3;53(6):1621-5. doi: 10.1002/anie.201307749., Epub 2014 Jan 27. PMID:24470331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (751 Kb) [Save to disk]
  • Biological Unit Coordinates (4o4i.pdb1.gz) 738 Kb
  • LPC: Ligand-Protein Contacts for 4O4I
  • CSU: Contacts of Structural Units for 4O4I
  • Structure Factors (1051 Kb)
  • Retrieve 4O4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O4I from S2C, [Save to disk]
  • Re-refined 4o4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O4I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o4i_E] [4o4i_D] [4o4i_F] [4o4i] [4o4i_B] [4o4i_C] [4o4i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4O4I: [Tubulin] [Tubulin_C ] by SMART
    • Other resources with information on 4O4I
  • Community annotation for 4O4I at PDBWiki (http://pdbwiki.org)

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