4O5Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BA, C6G, K enzyme
Primary referenceO(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine., Zhang F, Tsunoda M, Kikuchi Y, Wilkinson O, Millington CL, Margison GP, Williams DM, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2014 Jun;70(Pt 6):1669-79. doi:, 10.1107/S1399004714006178. Epub 2014 May 30. PMID:24914978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (4o5y.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 4O5Y
  • CSU: Contacts of Structural Units for 4O5Y
  • Structure Factors (137 Kb)
  • Retrieve 4O5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O5Y from S2C, [Save to disk]
  • Re-refined 4o5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o5y] [4o5y_A] [4o5y_B]
  • SWISS-PROT database:

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