4O6A Transferase Dna date Dec 20, 2013
title Mouse Cyclic Gmp-Amp Synthase (Cgas) In Complex With Dna
authors X.Zhang, Z.Chen, X.W.Zhang, Z.J.Chen
compound source
Molecule: Cyclic Gmp-Amp Synthase
Chain: A, B
Fragment: Unp Residues 147-507
Synonym: Cgamp Synthase, Cgas, M-Cgas, Mab-21 Domain-Contai Protein 1;
Ec: 2.7.7.86
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Mb21d1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna1
Chain: D, C
Engineered: Yes

Synthetic: Yes

Molecule: Dna2
Chain: E, F
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.711 96.330 75.989 90.00 98.28 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand ZN enzyme Transferase E.C.2.7.7.86 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (4o6a.pdb1.gz) 317 Kb
  • LPC: Ligand-Protein Contacts for 4O6A
  • CSU: Contacts of Structural Units for 4O6A
  • Structure Factors (1855 Kb)
  • Retrieve 4O6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O6A from S2C, [Save to disk]
  • Re-refined 4o6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O6A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4O6A, from MSDmotif at EBI
  • Fold representative 4o6a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o6a_C] [4o6a_B] [4o6a] [4o6a_D] [4o6a_F] [4o6a_E] [4o6a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O6A: [Mab-21 ] by SMART
  • Other resources with information on 4O6A
  • Community annotation for 4O6A at PDBWiki (http://pdbwiki.org)

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