4O9R Human Smoothened Receptor structure in complex with cyclopamine date
authors Wang, C., Weierstall, U., James, D., White, T.A., Wang, D., Liu, W., Spence, J.C.H., Doak, R.B., Nelson, G., Fromme, P., Fromme, R., Grotjohann, I., Kupitz, C., Zatsepin, N.A., Liu, H., Basu, S., Wacker, D., Han, G.W., Katritch, V., Boutet, S., Messerschmidt, M., Willams, G.J., Koglin, J.E., Seibert, M.M., Klinker, M., Gati, C., Shoeman, R.L., Barty, A., Chapman, H.N., Kirian, R.A., Beyerlein, K.R., Stevens, R.C., Li, D., Shah, S.T.A., Howe, N., Caffrey, M., Cherezov, V., GPCR, GPCR.Network.
compound source
symmetry
R_factor
R_Free 0.2779
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand CY8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography., Weierstall U, James D, Wang C, White TA, Wang D, Liu W, Spence JC, Bruce Doak R, Nelson G, Fromme P, Fromme R, Grotjohann I, Kupitz C, Zatsepin NA, Liu H, Basu S, Wacker D, Han GW, Katritch V, Boutet S, Messerschmidt M, Williams GJ, Koglin JE, Marvin Seibert M, Klinker M, Gati C, Shoeman RL, Barty A, Chapman HN, Kirian RA, Beyerlein KR, Stevens RC, Li D, Shah ST, Howe N, Caffrey M, Cherezov V, Nat Commun. 2014;5:3309. doi: 10.1038/ncomms4309. PMID:24525480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4o9r.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4O9R
  • CSU: Contacts of Structural Units for 4O9R
  • Structure Factors (161 Kb)
  • Retrieve 4O9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O9R from S2C, [Save to disk]
  • Re-refined 4o9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O9R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O9R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O9R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o9r] [4o9r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O9R: [Frizzled ] by SMART
  • Other resources with information on 4O9R
  • Community annotation for 4O9R at PDBWiki (http://pdbwiki.org)

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