4OB5 Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10 date
authors Jaffe, J.B., Rupert, P.B.
compound source
symmetry
R_factor
R_Free 0.20675
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand GOL, TMO enzyme
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceOntogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10., Finton KA, Friend D, Jaffe J, Gewe M, Holmes MA, Larman HB, Stuart A, Larimore K, Greenberg PD, Elledge SJ, Stamatatos L, Strong RK, PLoS Pathog. 2014 Sep 25;10(9):e1004403. doi: 10.1371/journal.ppat.1004403., eCollection 2014 Sep. PMID:25254371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4ob5.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 4OB5
  • CSU: Contacts of Structural Units for 4OB5
  • Structure Factors (426 Kb)
  • Retrieve 4OB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OB5 from S2C, [Save to disk]
  • Re-refined 4ob5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OB5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OB5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ob5] [4ob5_H] [4ob5_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OB5: [IGv ] by SMART
    • Other resources with information on 4OB5
  • Community annotation for 4OB5 at PDBWiki (http://pdbwiki.org)

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