4OD3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MES, ZN enzyme
Primary referenceDevelopmental pathway for potent V1V2-directed HIV-neutralizing antibodies., Doria-Rose NA, Schramm CA, Gorman J, Moore PL, Bhiman JN, Dekosky BJ, Ernandes MJ, Georgiev IS, Kim HJ, Pancera M, Staupe RP, Altae-Tran HR, Bailer RT, Crooks ET, Cupo A, Druz A, Garrett NJ, Hoi KH, Kong R, Louder MK, Longo NS, McKee K, Nonyane M, O'Dell S, Roark RS, Rudicell RS, Schmidt SD, Sheward DJ, Soto C, Wibmer CK, Yang Y, Zhang Z, Nisc Comparative Sequencing, Mullikin JC, Binley JM, Sanders RW, Wilson IA, Moore JP, Ward AB, Georgiou G, Williamson C, Abdool Karim SS, Morris L, Kwong PD, Shapiro L, Mascola JR, Nature. 2014 Mar 2. doi: 10.1038/nature13036. PMID:24590074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (4od3.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 4OD3
  • CSU: Contacts of Structural Units for 4OD3
  • Structure Factors (287 Kb)
  • Retrieve 4OD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OD3 from S2C, [Save to disk]
  • Re-refined 4od3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4od3] [4od3_H] [4od3_L]
  • SWISS-PROT database:
  • Domains found in 4OD3: [IG_like] [IGv ] by SMART

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