4OE4 Oxidoreductase date Jan 11, 2014
title Crystal Structure Of Yeast Aldh4a1 Complexed With Nad+
authors J.J.Tanner
compound source
Molecule: Delta-1-Pyrroline-5-Carboxylate Dehydrogenase, Mitochondrial;
Chain: A, B
Synonym: P5c Dehydrogenase, L-Glutamate Gamma-Semialdehyde Dehydrogenase;
Ec: 1.2.1.88
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: S288c
Gene: Put2, Yhr037w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmd
Expression_system_plasmid: Pka8h
symmetry Space Group: P 63
R_factor 0.173 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.037 108.037 181.027 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.17 Å
ligand NAD enzyme Oxidoreductase E.C.1.2.1.88 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Studies of Yeast Delta-Pyrroline-5-carboxylate Dehydrogenase (ALDH4A1): Active Site Flexibility and Oligomeric State., Pemberton TA, Srivastava D, Sanyal N, Henzl MT, Becker DF, Tanner JJ, Biochemistry. 2014 Feb 17. PMID:24502590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (4oe4.pdb1.gz) 927 Kb
  • LPC: Ligand-Protein Contacts for 4OE4
  • CSU: Contacts of Structural Units for 4OE4
  • Structure Factors (589 Kb)
  • Retrieve 4OE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OE4 from S2C, [Save to disk]
  • Re-refined 4oe4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OE4, from MSDmotif at EBI
  • Fold representative 4oe4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oe4_A] [4oe4_B] [4oe4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OE4
  • Community annotation for 4OE4 at PDBWiki (http://pdbwiki.org)

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