4OGR crystal structure of P-TEFb complex with AFF4 and Tat date
authors Schulze-Gahmen, U., Alber, T.
compound source
symmetry
R_factor
R_Free 0.2323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand ACE, ADN, TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, I


C, G, L


F, K, B


H, M, D


Primary referenceAFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter., Schulze-Gahmen U, Lu H, Zhou Q, Alber T, Elife. 2014 Apr 24;3:e02375. doi: 10.7554/eLife.02375. PMID:24843025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (990 Kb) [Save to disk]
  • Biological Unit Coordinates (4ogr.pdb1.gz) 334 Kb
  • Biological Unit Coordinates (4ogr.pdb2.gz) 320 Kb
  • Biological Unit Coordinates (4ogr.pdb3.gz) 335 Kb
  • LPC: Ligand-Protein Contacts for 4OGR
  • CSU: Contacts of Structural Units for 4OGR
  • Structure Factors (1307 Kb)
  • Retrieve 4OGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGR from S2C, [Save to disk]
  • Re-refined 4ogr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OGR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OGR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ogr_G] [4ogr_F] [4ogr_L] [4ogr_H] [4ogr_K] [4ogr_A] [4ogr_M] [4ogr] [4ogr_I] [4ogr_E] [4ogr_B] [4ogr_C] [4ogr_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OGR: [CYCLIN] [S_TKc ] by SMART
    • Other resources with information on 4OGR
  • Community annotation for 4OGR at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science