4OI2 C. Elegans Clp1 and ADP and Mg2+ (turnover state) date
authors Dikfidan, A., Loll, B., Zeymer, C., Clausen, T., Meinhart, A.
compound source
symmetry
R_factor
R_Free 0.25558
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 2PE, ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1., Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A, Mol Cell. 2014 Jun 19;54(6):975-86. doi: 10.1016/j.molcel.2014.04.005. Epub 2014 , May 8. PMID:24813946
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (4oi2.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4OI2
  • CSU: Contacts of Structural Units for 4OI2
  • Structure Factors (259 Kb)
  • Retrieve 4OI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OI2 from S2C, [Save to disk]
  • Re-refined 4oi2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OI2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OI2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oi2] [4oi2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OI2
  • Community annotation for 4OI2 at PDBWiki (http://pdbwiki.org)

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