4OIB Crystal Structure of ICAM-5 D1-D4 ectodomain fragment, Space Group R3 date
authors Recacha, R., Jimenez, D., Tian, L., Barredo, R., Ghamberg, C., Casasnovas, J.M.
compound source
R_Free 0.2733
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand BMA, MAN, NAG enzyme

Primary referenceCrystal structures of an ICAM-5 ectodomain fragment show electrostatic-based homophilic adhesions., Recacha R, Jimenez D, Tian L, Barredo R, Gahmberg CG, Casasnovas JM, Acta Crystallogr D Biol Crystallogr. 2014 Jul 1;70(Pt 7):1934-43. doi:, 10.1107/S1399004714009468. Epub 2014 Jun 29. PMID:25004970
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (4oib.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4OIB
  • CSU: Contacts of Structural Units for 4OIB
  • Structure Factors (496 Kb)
  • Retrieve 4OIB in mmCIF format [Save to disk]
  • Re-refined 4oib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OIB, from MSDmotif at EBI
  • Fold representative 4oib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oib_A] [4oib]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OIB: [IG] [IG_like ] by SMART
  • Other resources with information on 4OIB
  • Community annotation for 4OIB at PDBWiki (http://pdbwiki.org)

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