4OJI Crystal Structure of Twister Ribozyme date
authors Liu, Y., Wilson, T.J., McPhee, S.A., Lilley, D.M.J.
compound source
R_Free 0.2028
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MG enzyme
Primary referenceCrystal structure and mechanistic investigation of the twister ribozyme., Liu Y, Wilson TJ, McPhee SA, Lilley DM, Nat Chem Biol. 2014 Sep;10(9):739-44. doi: 10.1038/nchembio.1587. Epub 2014 Jul, 20. PMID:25038788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (4oji.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4OJI
  • CSU: Contacts of Structural Units for 4OJI
  • Structure Factors (384 Kb)
  • Retrieve 4OJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OJI from S2C, [Save to disk]
  • Re-refined 4oji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OJI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oji] [4oji_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OJI
  • Community annotation for 4OJI at PDBWiki (http://pdbwiki.org)

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