4OM7 Crystal structure of TIR domain of TLR6 date
authors Park, H.H., Jang, T.H.
compound source
symmetry
R_factor
R_Free 0.2853
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of TIR Domain of TLR6 Reveals Novel Dimeric Interface of TIR-TIR Interaction for Toll-Like Receptor Signaling Pathway., Jang TH, Park HH, J Mol Biol. 2014 Sep 23;426(19):3305-13. doi: 10.1016/j.jmb.2014.07.024. Epub, 2014 Jul 31. PMID:25088687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4om7.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 4OM7
  • Structure Factors (324 Kb)
  • Retrieve 4OM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OM7 from S2C, [Save to disk]
  • Re-refined 4om7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OM7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OM7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4om7_A] [4om7] [4om7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OM7: [TIR ] by SMART
  • Other resources with information on 4OM7
  • Community annotation for 4OM7 at PDBWiki (http://pdbwiki.org)

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