4OMD Hydrolase Hydrolase Inhibitor date Jan 27, 2014
title X-Ray Structure Of Human Furin In Complex With The Competiti Inhibitor Phac-Rvr-Amba
authors S.O.Dahms, M.E.Than
compound source
Molecule: Furin
Chain: A, B, C, D, E, F
Fragment: Unp Residues 108-574
Synonym: Dibasic-Processing Enzyme, Paired Basic Amino Acid Cleaving Enzyme, Pace;
Ec: 3.4.21.75
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Furin, Fur, Pace, Pcsk3
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec

Molecule: Phenylacetyl-Arg-Val-Arg-(Amidomethyl)Benzamidine
Chain: H, I, J, K, L, N
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.616 152.612 168.538 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 00S, CA, FMT, HY1, NA enzyme Hydrolase E.C.3.4.21.75 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceX-ray Structures of Human Furin in Complex with Competitive Inhibitors., Dahms SO, Hardes K, Becker GL, Steinmetzer T, Brandstetter H, Than ME, ACS Chem Biol. 2014 Apr 1. PMID:24666235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (4omd.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (4omd.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (4omd.pdb3.gz) 82 Kb
  • Biological Unit Coordinates (4omd.pdb4.gz) 83 Kb
  • Biological Unit Coordinates (4omd.pdb5.gz) 83 Kb
  • Biological Unit Coordinates (4omd.pdb6.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4OMD
  • CSU: Contacts of Structural Units for 4OMD
  • Structure Factors (571 Kb)
  • Retrieve 4OMD in mmCIF format [Save to disk]
  • Re-refined 4omd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OMD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OMD, from MSDmotif at EBI
  • Fold representative 4omd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4omd_J] [4omd_A] [4omd] [4omd_B] [4omd_L] [4omd_C] [4omd_F] [4omd_K] [4omd_H] [4omd_E] [4omd_N] [4omd_I] [4omd_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OMD
  • Community annotation for 4OMD at PDBWiki (http://pdbwiki.org)

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