4ONF Fab fragment of 3D6 in complex with amyloid beta 1-7 date
authors Feinberg, H., Saldanha, J.W., Diep, L., Goel, A., Widom, A., Veldman, G.M., Weis, W.I., Schenk, D., Basi, G.S.
compound source
symmetry
R_factor
R_Free 0.2035
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Primary referenceCrystal structure reveals conservation of amyloid-beta conformation recognized by 3D6 following humanization to bapineuzumab., Feinberg H, Saldanha JW, Diep L, Goel A, Widom A, Veldman GM, Weis WI, Schenk D, Basi GS, Alzheimers Res Ther. 2014 Jun 2;6(3):31. doi: 10.1186/alzrt261. eCollection 2014. PMID:25024748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4onf.pdb1.gz) 144 Kb
  • CSU: Contacts of Structural Units for 4ONF
  • Structure Factors (251 Kb)
  • Retrieve 4ONF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ONF from S2C, [Save to disk]
  • Re-refined 4onf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ONF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ONF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ONF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4onf] [4onf_H] [4onf_L] [4onf_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ONF: [IG_like] [IGv ] by SMART
    • Other resources with information on 4ONF
  • Community annotation for 4ONF at PDBWiki (http://pdbwiki.org)

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