4OP1 GKRP bound to AMG0556 and Sorbitol-6-Phosphate date
authors Jordan, S.R., Chmait, S.
compound source
symmetry
R_factor
R_Free 0.26818
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
ligand 2UW, GOL, IOD, S6P, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSmall Molecule Disruptors of the Glucokinase-Glucokinase Regulatory Protein Interaction: 5. A Novel Aryl Sulfone Series, Optimization Through Conformational Analysis., Tamayo NA, Norman MH, Bartberger MD, Hong FT, Bo Y, Liu L, Nishimura N, Yang KC, Tadesse S, Fotsch C, Chen J, Chmait S, Cupples R, Hale C, Jordan SR, Lloyd DJ, Sivits G, Van G, St Jean DJ Jr, J Med Chem. 2015 Jun 11;58(11):4462-82. doi: 10.1021/jm5018175. Epub 2015 Jun 1. PMID:25914941
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4op1.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (4op1.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 4OP1
  • CSU: Contacts of Structural Units for 4OP1
  • Structure Factors (1216 Kb)
  • Retrieve 4OP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OP1 from S2C, [Save to disk]
  • Re-refined 4op1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OP1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OP1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4op1] [4op1_B] [4op1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OP1
  • Community annotation for 4OP1 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science