4OQT LINGO-1/Li81 Fab complex date
authors Pepinsky, R.B., Arndt, J.W., Quan, C., Gao, Y., Quintero-Monzon, O., Lee, X., Mi, S.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.23
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceStructure of the LINGO-1-anti-LINGO-1 Li81 antibody complex provides insights into the biology of LINGO-1 and the mechanism of action of the antibody therapy., Pepinsky RB, Arndt JW, Quan C, Gao Y, Quintero-Monzon O, Lee X, Mi S, J Pharmacol Exp Ther. 2014 Apr 22. PMID:24756303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (4oqt.pdb1.gz) 595 Kb
  • Biological Unit Coordinates (4oqt.pdb2.gz) 300 Kb
  • LPC: Ligand-Protein Contacts for 4OQT
  • CSU: Contacts of Structural Units for 4OQT
  • Structure Factors (556 Kb)
  • Retrieve 4OQT in mmCIF format [Save to disk]
  • Re-refined 4oqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OQT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OQT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oqt] [4oqt_H] [4oqt_A] [4oqt_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OQT: [IG_like] [IGc2] [IGv] [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 4OQT
  • Community annotation for 4OQT at PDBWiki (http://pdbwiki.org)

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