4ORH Crystal structure of RNF8 bound to the UBC13/MMS2 heterodimer date
authors Campbell, S.J., Edwards, R.A., Glover, J.N.M.
compound source
symmetry
R_factor
R_Free 0.2816
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.80
ligand ZN enzyme
note 4ORH supersedes 4EPO
Gene
Ontology
ChainFunctionProcessComponent
A, I, E


F, J, B


Primary referenceMolecular Insights into the Function of RING Finger (RNF)-containing Proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent Ubiquitylation., Campbell SJ, Edwards RA, Leung CC, Neculai D, Hodge CD, Dhe-Paganon S, Glover JN, J Biol Chem. 2012 Jul 6;287(28):23900-10. Epub 2012 May 15. PMID:22589545
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (518 Kb) [Save to disk]
  • Biological Unit Coordinates (4orh.pdb1.gz) 190 Kb
  • Biological Unit Coordinates (4orh.pdb2.gz) 189 Kb
  • Biological Unit Coordinates (4orh.pdb3.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 4ORH
  • CSU: Contacts of Structural Units for 4ORH
  • Structure Factors (1023 Kb)
  • Retrieve 4ORH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ORH from S2C, [Save to disk]
  • Re-refined 4orh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ORH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ORH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ORH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4orh_G] [4orh_A] [4orh_I] [4orh_C] [4orh_B] [4orh_K] [4orh_F] [4orh_J] [4orh_E] [4orh_H] [4orh_L] [4orh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ORH: [RING] [UBCc ] by SMART
    • Other resources with information on 4ORH
  • Community annotation for 4ORH at PDBWiki (http://pdbwiki.org)

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