4OSI Dna Binding Protein Dna date Feb 13, 2014
title Crystal Structure Of The Tal Effector Dhax3 With Ni Rvd At 2 Angstrom Resolution
authors D.Deng, J.P.Wu, C.Y.Yan, X.J.Pan, N.Yan
compound source
Molecule: Hax3
Chain: A, B
Fragment: Unp Residues 231-720
Engineered: Yes
Mutation: Yes
Organism_scientific: Xanthomonas Campestris Pv. Armoraciae
Organism_taxid: 329463
Gene: Hax3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Tpgptpcpcpcptptptpaptpcptpcptpcpt)-3');
Chain: I, G
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'- D(Apgpapgpapgpaptpapapapgpgpgpapcpa)-3');
Chain: J, H
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.243 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.289 89.364 90.274 90.00 103.74 90.00
method X-Ray Diffractionresolution 2.85 Å
Primary referenceRevisiting the TALE repeat., Deng D, Yan C, Wu J, Pan X, Yan N, Protein Cell. 2014 Apr;5(4):297-306. doi: 10.1007/s13238-014-0035-2. Epub 2014, Mar 14. PMID:24622844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (358 Kb) [Save to disk]
  • Biological Unit Coordinates (4osi.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (4osi.pdb2.gz) 179 Kb
  • CSU: Contacts of Structural Units for 4OSI
  • Structure Factors (474 Kb)
  • Retrieve 4OSI in mmCIF format [Save to disk]
  • Re-refined 4osi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OSI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OSI, from MSDmotif at EBI
  • Fold representative 4osi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4osi_H] [4osi_J] [4osi_G] [4osi_A] [4osi] [4osi_I] [4osi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OSI
  • Community annotation for 4OSI at PDBWiki (http://pdbwiki.org)

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