4OTD Crystal Structure of PRK1 Catalytic Domain date
authors Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.
compound source
symmetry
R_factor
R_Free 0.2214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of PRK1 in Complex with the Clinical Compounds Lestaurtinib and Tofacitinib Reveal Ligand Induced Conformational Changes., Chamberlain P, Delker S, Pagarigan B, Mahmoudi A, Jackson P, Abbasian M, Muir J, Raheja N, Cathers B, PLoS One. 2014 Aug 11;9(8):e103638. doi: 10.1371/journal.pone.0103638., eCollection 2014. PMID:25111382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4otd.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4OTD
  • CSU: Contacts of Structural Units for 4OTD
  • Structure Factors (502 Kb)
  • Retrieve 4OTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OTD from S2C, [Save to disk]
  • Re-refined 4otd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OTD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OTD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4otd] [4otd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OTD: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4OTD
  • Community annotation for 4OTD at PDBWiki (http://pdbwiki.org)

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