4OV6 Crystal structure of PCSK9(53-451) with Adnectin date
authors Khan, J.A.
compound source
symmetry
R_factor
R_Free 0.2308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.69
ligand EDO, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B


Primary referencePharmacologic Profile of the Adnectin BMS-962476, a Small Protein Biologic Alternative to PCSK9 Antibodies for LDL Lowering., Mitchell T, Chao G, Sitkoff D, Lo F, Monshizadegan H, Meyers D, Low S, Russo K, DiBella R, Denhez F, Gao M, Myers J, Duke G, Witmer M, Miao B, Ho SP, Khan J, Parker RA, J Pharmacol Exp Ther. 2014 Jun 10. pii: jpet.114.214221. PMID:24917546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (4ov6.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (4ov6.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4OV6
  • CSU: Contacts of Structural Units for 4OV6
  • Structure Factors (2303 Kb)
  • Retrieve 4OV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OV6 from S2C, [Save to disk]
  • Re-refined 4ov6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OV6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ov6] [4ov6_B] [4ov6_A] [4ov6_D] [4ov6_G] [4ov6_F] [4ov6_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OV6: [FN3 ] by SMART
    • Other resources with information on 4OV6
  • Community annotation for 4OV6 at PDBWiki (http://pdbwiki.org)

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