4P0C Crystal Structure of NHERF2 PDZ1 Domain in Complex with LPA2 date
authors Holcomb, J., Jiang, Y., Lu, G., Trescott, L., Brunzelle, J., Sirinupong, N., Li, C., Naren, A., Yang, Z.
compound source
symmetry
R_factor
R_Free 0.1769
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.34
ligand CL, SCN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into PDZ-mediated interaction of NHERF2 and LPA(2), a cellular event implicated in CFTR channel regulation., Holcomb J, Jiang Y, Lu G, Trescott L, Brunzelle J, Sirinupong N, Li C, Naren AP, Yang Z, Biochem Biophys Res Commun. 2014 Mar 28;446(1):399-403. doi:, 10.1016/j.bbrc.2014.02.128. Epub 2014 Mar 12. PMID:24613836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4p0c.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4P0C
  • CSU: Contacts of Structural Units for 4P0C
  • Structure Factors (431 Kb)
  • Retrieve 4P0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P0C from S2C, [Save to disk]
  • Re-refined 4p0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P0C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P0C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p0c_A] [4p0c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P0C: [PDZ ] by SMART
  • Other resources with information on 4P0C
  • Community annotation for 4P0C at PDBWiki (http://pdbwiki.org)

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