4P10 pro-carboxypeptidase U In Complex With 5-(3-aminopropyl)-1-propyl-6,7-dihydro-4H-benzimidazole-5-carboxylic acid date
authors Hallberg, K., Sjogren, T.
compound source
symmetry
R_factor
R_Free 0.21812
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 2B8, DMS, NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of conformationally restricted inhibitors of active thrombin activatable fibrinolysis inhibitor (TAFIa)., Brink M, Dahlen A, Olsson T, Polla M, Svensson T, Bioorg Med Chem. 2014 Apr 1;22(7):2261-8. doi: 10.1016/j.bmc.2014.02.010. Epub, 2014 Feb 18. PMID:24588961
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4p10.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4P10
  • CSU: Contacts of Structural Units for 4P10
  • Structure Factors (1655 Kb)
  • Retrieve 4P10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P10 from S2C, [Save to disk]
  • Re-refined 4p10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P10
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P10, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p10_A] [4p10]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P10: [Zn_pept ] by SMART
    • Other resources with information on 4P10
  • Community annotation for 4P10 at PDBWiki (http://pdbwiki.org)

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