4P26 Structure of the P domain from a GI.7 Norovirus variant in complex with A-type 2 HBGA date
authors Shanker, S., Czako, R., Sankaran, B., Atmar, R., Estes, M., Prasad, B.V.V.
compound source
symmetry
R_factor
R_Free 0.1890
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand A2G, FUC, GAL, NAG enzyme
Primary referenceStructural Analysis of Determinants to HBGA Binding Specificity in GI Noroviruses., Shanker S, Czako R, Sankaran B, Atmar RL, Estes MK, Prasad BV, J Virol. 2014 Mar 19. PMID:24648450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (400 Kb) [Save to disk]
  • Biological Unit Coordinates (4p26.pdb1.gz) 197 Kb
  • Biological Unit Coordinates (4p26.pdb2.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 4P26
  • CSU: Contacts of Structural Units for 4P26
  • Structure Factors (1400 Kb)
  • Retrieve 4P26 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P26 from S2C, [Save to disk]
  • Re-refined 4p26 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P26 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P26
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P26, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p26_B] [4p26] [4p26_C] [4p26_A] [4p26_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4P26
  • Community annotation for 4P26 at PDBWiki (http://pdbwiki.org)

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