4P46 J809.B5 Y31A TCR bound to IAb3K date
authors Stadinski, B.D., Huseby, E.S., Trenh, P., Stern, L.J.
compound source
symmetry
R_factor
R_Free 0.2467
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
Gene
Ontology
ChainFunctionProcessComponent
C


D


Primary referenceEffect of CDR3 Sequences and Distal V Gene Residues in Regulating TCR-MHC Contacts and Ligand Specificity., Stadinski BD, Trenh P, Duke B, Huseby PG, Li G, Stern LJ, Huseby ES, J Immunol. 2014 May 9. PMID:24813203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (4p46.pdb1.gz) 261 Kb
  • CSU: Contacts of Structural Units for 4P46
  • Structure Factors (449 Kb)
  • Retrieve 4P46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P46 from S2C, [Save to disk]
  • Re-refined 4p46 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P46
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P46, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p46_D] [4p46_C] [4p46] [4p46_B] [4p46_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4P46: [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 4P46
  • Community annotation for 4P46 at PDBWiki (http://pdbwiki.org)

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