4P5Q Human EphA3 Kinase domain in complex with quinoxaline derivatives date
authors Dong, J., Caflisch, A.
compound source
symmetry
R_factor
R_Free 0.1819
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand Q0B enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePyrrolo[3,2-b]quinoxaline Derivatives as Types I and II Eph Tyrosine Kinase Inhibitors: Structure-Based Design, Synthesis, and in Vivo Validation., Unzue A, Dong J, Lafleur K, Zhao H, Frugier E, Caflisch A, Nevado C, J Med Chem. 2014 Jul 30. PMID:25076195
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4p5q.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4P5Q
  • CSU: Contacts of Structural Units for 4P5Q
  • Structure Factors (1067 Kb)
  • Retrieve 4P5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P5Q from S2C, [Save to disk]
  • Re-refined 4p5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P5Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4P5Q, from MSDmotif at EBI
  • Fold representative 4p5q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p5q_A] [4p5q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P5Q: [TyrKc ] by SMART
  • Other resources with information on 4P5Q
  • Community annotation for 4P5Q at PDBWiki (http://pdbwiki.org)

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