4P9U FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with DNA date
authors Kull, F.J., Shi, W.
compound source
symmetry
R_factor
R_Free 0.2523
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.21
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceThe 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand., Shi W, Kovacikova G, Lin W, Taylor RK, Skorupski K, Kull FJ, Nat Commun. 2015 Jan 21;6:6032. doi: 10.1038/ncomms7032. PMID:25607896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (4p9u.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (4p9u.pdb2.gz) 114 Kb
  • CSU: Contacts of Structural Units for 4P9U
  • Structure Factors (409 Kb)
  • Retrieve 4P9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P9U from S2C, [Save to disk]
  • Re-refined 4p9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P9U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p9u_D] [4p9u_H] [4p9u_F] [4p9u_B] [4p9u] [4p9u_A] [4p9u_C] [4p9u_G] [4p9u_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P9U: [HTH_GNTR ] by SMART
  • Other resources with information on 4P9U
  • Community annotation for 4P9U at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science