4PBX Crystal structure of the six N-terminal domains of human receptor protein tyrosine phosphatase sigma date
authors Coles, C.H., Mitakidis, N., Zhang, P., Elegheert, J., Lu, W., Stoker, A.W., Nakagawa, T., Craig, A.M., Jones, E.Y., Aricescu, A.R.
compound source
symmetry
R_factor
R_Free 0.26497
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.15
ligand NAG enzyme
Primary referenceStructural basis for extracellular cis and trans RPTPsigma signal competition in synaptogenesis., Coles CH, Mitakidis N, Zhang P, Elegheert J, Lu W, Stoker AW, Nakagawa T, Craig AM, Jones EY, Aricescu AR, Nat Commun. 2014 Nov 11;5:5209. doi: 10.1038/ncomms6209. PMID:25385546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4pbx.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 4PBX
  • CSU: Contacts of Structural Units for 4PBX
  • Structure Factors (422 Kb)
  • Retrieve 4PBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PBX from S2C, [Save to disk]
  • Re-refined 4pbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PBX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PBX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pbx] [4pbx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PBX: [FN3] [IGc2 ] by SMART
    • Other resources with information on 4PBX
  • Community annotation for 4PBX at PDBWiki (http://pdbwiki.org)

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