4PD2		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3DR, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization., Biela A, Coste F, Culard F, Guerin M, Goffinont S, Gasteiger K, Ciesla J, Winczura A, Kazimierczuk Z, Gasparutto D, Carell T, Tudek B, Castaing B, Nucleic Acids Res. 2014;42(16):10748-61. doi: 10.1093/nar/gku613. Epub 2014 Aug, 20. PMID:25143530

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (4pd2.pdb1.gz) 117 Kb LPC: Ligand-Protein Contacts for 4PD2 CSU: Contacts of Structural Units for 4PD2 Structure Factors (3830 Kb) Retrieve 4PD2 in mmCIF format [Save to disk] Re-refined 4pd2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PD2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pd2] [4pd2_A] [4pd2_B] [4pd2_C] SWISS-PROT database: Domains found in 4PD2: [Fapy_DNA_glyco] [H2TH ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---