4PDN		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Gene	WCE
Gene Ontology	Chain Function Process Component A
Primary reference	The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation., Kobayashi K, Katz A, Rajkovic A, Ishii R, Branson OE, Freitas MA, Ishitani R, Ibba M, Nureki O, Nucleic Acids Res. 2014 Oct 29;42(19):12295-305. doi: 10.1093/nar/gku898. Epub, 2014 Oct 1. PMID:25274739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (4pdn.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 4PDN CSU: Contacts of Structural Units for 4PDN Structure Factors (293 Kb) Retrieve 4PDN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PDN from S2C, [Save to disk] Re-refined 4pdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PDN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pdn] [4pdn_A] SWISS-PROT database:

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